Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs9908049 chr17:45502096 G/C 6.35E-5 256 19.97 33.6 32.3 KM Plot
SARC rs9910922 chr17:48162064 G/T 2.74E-5 246 31.1 33.08 9.27 KM Plot
SARC rs9913014 chr17:45460189 C/T 4.93E-5 257 19.83 33.6 32.3 KM Plot
SARC rs9915222 chr17:45448615 G/T 1.15E-5 249 19.83 33.6 32.3 KM Plot
SARC rs9968571 chr5:114959009 A/G 7.87E-6 251 32.88 26.25 4.87 KM Plot
SKCM rs10056663 chr5:145789681 C/T 0 99 14.68 18.68 6.33 KM Plot
SKCM rs1009539 chr12:63414655 A/G 1.82E-7 101 8.8 14.3 15.3 KM Plot
SKCM rs1009540 chr12:63414872 C/A 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs10106250 chr8:11581846 A/G 2.69E-5 101 9 14.45 15.02 KM Plot
SKCM rs10220371 chr14:88501852 C/T 2.15E-13 101 6.83 14.9 15.13 KM Plot
SKCM rs10401298 chr19:48680150 G/A 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs10405655 chr19:48682779 T/C 7.49E-5 100 15.68 14.7 11.73 KM Plot
SKCM rs10406631 chr19:48686396 C/A 0.000101 98 15.38 14.7 11.73 KM Plot
SKCM rs10407902 chr19:48680984 C/G 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs10408943 chr19:48681225 G/A 6.73E-5 101 15.38 14.8 11.73 KM Plot